About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29276COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides29277ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides29278G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN
Paelopatides29279REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29280MYOTUBULARIN-RELATED
Paelopatides29281MYOTUBULARIN-RELATED
Paelopatides29282GLYCOSYL TRANSFERASE
Paelopatides29283CYCLINS
Paelopatides29284ATP-BINDING TRANSPORT PROTEIN-RELATED
Paelopatides29285MCT-1 PROTEIN
Paelopatides29286REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29287-
Paelopatides29288CWF19, CELL CYCLE CONTROL PROTEIN
Paelopatides29289REVERSE TRANSCRIPTASES
Paelopatides29290RETROTRANSPOSON
Paelopatides29291-
Paelopatides29292MITOCHONDRIAL RIBOSOMAL PROTEIN S25
Paelopatides29293MITOCHONDRIAL RIBOSOMAL PROTEIN S33
Paelopatides29294-
Paelopatides29295MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
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