About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29317-
Paelopatides29318CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA
Paelopatides29319CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA
Paelopatides29320-
Paelopatides29321ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides29322WD REPEAT PROTEIN 26-RELATED
Paelopatides29323GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides29324COENZYME Q10 BIOSYNTHESIS PROTEIN 7
Paelopatides29325ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 6-INTERACTING PROTEIN 6
Paelopatides29326UNCHARACTERIZED
Paelopatides29327DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
Paelopatides29330-
Paelopatides29331-
Paelopatides29332CS DOMAIN-CONTAINING PROTEIN
Paelopatides29333CS DOMAIN-CONTAINING PROTEIN
Paelopatides29334-
Paelopatides29335RETROTRANSPOSON
Paelopatides29336ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29337PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29338PHD-TYPE DOMAIN-CONTAINING PROTEIN
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