About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29296STRAWBERRY NOTCH-RELATED
Paelopatides29297METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides29298-
Paelopatides29299REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29300REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29301ZINC FINGER PROTEIN
Paelopatides29302-
Paelopatides29303TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA
Paelopatides29304TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA
Paelopatides29305-
Paelopatides29306TGF-BETA FAMILY
Paelopatides29307NARDILYSIN
Paelopatides29308-
Paelopatides29309COILED-COIL DOMAIN-CONTAINING PROTEIN 152
Paelopatides29310PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides29311ENDONUCLEASE-RELATED
Paelopatides29312TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides29313PARANEOPLASTIC ANTIGEN
Paelopatides29315PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29316CXC DOMAIN-CONTAINING PROTEIN-RELATED
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