About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29339HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides29340-
Paelopatides29341RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Paelopatides29342REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29343-
Paelopatides29344PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29345L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides29346-
Paelopatides29347-
Paelopatides29348DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides29349-
Paelopatides29350-
Paelopatides29351PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29352CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19
Paelopatides29353UNCHARACTERIZED
Paelopatides29354UNCHARACTERIZED
Paelopatides29355REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29356-
Paelopatides29357COMPLEMENT FACTOR H-RELATED
Paelopatides29358GUANYLATE BINDING PROTEIN
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