About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29587POL PROTEIN
Paelopatides29588ENDONUCLEASE-RELATED
Paelopatides29589-
Paelopatides29590POL PROTEIN
Paelopatides29591ENZYMATIC POLYPROTEIN-RELATED
Paelopatides29592ENDONUCLEASE-RELATED
Paelopatides29593ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29594TETRATRICOPEPTIDE REPEAT PROTEIN 24
Paelopatides29595GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
Paelopatides29596MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S27
Paelopatides29597TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides29598-
Paelopatides29601PROTEIN, PUTATIVE-RELATED
Paelopatides29602REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29603REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29604REVERSE TRANSCRIPTASE
Paelopatides29605-
Paelopatides29606ENZYMATIC POLYPROTEIN-RELATED
Paelopatides29607CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides29608REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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