About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29941ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides29942FORKHEAD BOX PROTEIN N3-LIKE PROTEIN-RELATED
Paelopatides29943-
Paelopatides29944HISTONE H2A
Paelopatides29945-
Paelopatides29946LD41958P
Paelopatides29947-
Paelopatides29948-
Paelopatides29949-
Paelopatides29950ENDONUCLEASE-RELATED
Paelopatides29951CARBOXYLIC ESTER HYDROLASE
Paelopatides29955DNA-DIRECTED RNA POLYMERASE
Paelopatides29956CDC68 RELATED
Paelopatides29957LYSINE-SPECIFIC DEMETHYLASE
Paelopatides29958ZINC FINGER PROTEIN
Paelopatides29959ATP-DEPENDENT PROTEASE
Paelopatides29960-
Paelopatides29961TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides29962-
Paelopatides29963RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
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