About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29984-
Paelopatides29985HOLLIDAY JUNCTION ATP-DEPENDENT DNA HELICASE RUVA
Paelopatides29986ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides29987PROTEIN CBG26694
Paelopatides29988PROTEIN CBG26694
Paelopatides29989-
Paelopatides29990OTU DOMAIN CONTAINING PROTEIN
Paelopatides29991RETROTRANSPOSON
Paelopatides29992RETROTRANSPOSON
Paelopatides29993PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides29994TYROSINE-PROTEIN KINASE
Paelopatides29995-
Paelopatides29996DED DOMAIN-CONTAINING PROTEIN
Paelopatides299971,4-ALPHA-GLUCAN-BRANCHING ENZYME
Paelopatides299981,4-ALPHA-GLUCAN-BRANCHING ENZYME
Paelopatides29999NETRIN RECEPTOR UNC5
Paelopatides30000HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides30001REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30002FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides30003-
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