About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides29964WSCD FAMILY MEMBER CG9164
Paelopatides29965WSCD FAMILY MEMBER CG9164
Paelopatides29966HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2
Paelopatides29967-
Paelopatides29968-
Paelopatides29969TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides29970ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides29971REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29972ENDONUCLEASE-RELATED
Paelopatides29973TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides29974REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides29975AGAP008170-PA
Paelopatides29976-
Paelopatides29977REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides29978OS05G0310600 PROTEIN
Paelopatides29979PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides29980-
Paelopatides29981RAN BINDING PROTEIN 9-RELATED
Paelopatides29982ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides29983-
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