About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30024PROTEIN CBG26694
Paelopatides30025-
Paelopatides30026UNCHARACTERIZED
Paelopatides30027ENZYMATIC POLYPROTEIN-RELATED
Paelopatides30028INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides30029ENDONUCLEASE
Paelopatides30030METHYLTRANSFERASE
Paelopatides30031-
Paelopatides30032-
Paelopatides30033-
Paelopatides30034REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30035REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30036UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides30037REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30038SUSHI DOMAIN-CONTAINING PROTEIN
Paelopatides30039ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30040PROTEIN CBG26694
Paelopatides30041-
Paelopatides30042N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Paelopatides30044-
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