About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30067TRANSCRIPTIONAL REPRESSOR PROTEIN YY
Paelopatides30069PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides30070-
Paelopatides30071-
Paelopatides30072-
Paelopatides30073-
Paelopatides30074-
Paelopatides30075POL PROTEIN
Paelopatides30076ENDONUCLEASE-RELATED
Paelopatides30077L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides30078SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides30079-
Paelopatides30080SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides30081ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30082ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
Paelopatides30083DNA-DIRECTED RNA POLYMERASE I,II,III
Paelopatides30084ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30085-
Paelopatides30086-
Paelopatides30087-
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