About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30715PROTEIN CBG26694
Paelopatides30716ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30717REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30718UNCHARACTERIZED
Paelopatides30719-
Paelopatides30720SI:CH211-196P9.1-RELATED
Paelopatides30721OLIGOPEPTIDE TRANSPORTER-RELATED
Paelopatides30722DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides30723OLIGOPEPTIDE TRANSPORTER-RELATED
Paelopatides30724-
Paelopatides30725TRANSPOSON
Paelopatides30726ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides30727ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30728CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30729NUCLEOTIDE KINASE
Paelopatides30730RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
Paelopatides30731PHOSPHONATES-BINDING PERIPLASMIC PROTEIN
Paelopatides30732ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30733-
Paelopatides30734-
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