About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30757IDURONATE 2-SULFATASE
Paelopatides30758RETROTRANSPOSON
Paelopatides30759EPM2A-INTERACTING PROTEIN 1
Paelopatides30760ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides30761NEPHRIN
Paelopatides30762-
Paelopatides30763PROTEIN CBG26694
Paelopatides30764PATHOGENESIS-RELATED FAMILY PROTEIN
Paelopatides30765TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides30766SOLUTE CARRIER FAMILY 39
Paelopatides30767-
Paelopatides30768PHOSPHATASE, ORPHAN 1, 2
Paelopatides30769TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED
Paelopatides30770FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN
Paelopatides30771IP21249P
Paelopatides30772PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides30773ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30774REVERSE TRANSCRIPTASES
Paelopatides30775TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides30776PROTEASE M1 ZINC METALLOPROTEASE
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