About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30839-
Paelopatides30840WD-REPEAT PROTEIN
Paelopatides308412-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA
Paelopatides30842-
Paelopatides30843PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides30844RETROTRANSPOSON
Paelopatides30845ALDEHYDE DEHYDROGENASE-RELATED
Paelopatides30850CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30851UNCHARACTERIZED
Paelopatides30852UNCHARACTERIZED
Paelopatides30853VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE
Paelopatides30854L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides30856-
Paelopatides30857-
Paelopatides30858-
Paelopatides30859RIBONUCLEASE T2
Paelopatides30862U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2
Paelopatides30863TRICHOHYALIN-RELATED
Paelopatides30864TRICHOHYALIN-RELATED
Paelopatides30865-
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