About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30819ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30820E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides30821-
Paelopatides30822-
Paelopatides30823-
Paelopatides30824HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides30825-
Paelopatides30826PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides30827TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1
Paelopatides30828-
Paelopatides30829UNCHARACTERIZED
Paelopatides30830ENDONUCLEASE-RELATED
Paelopatides30831ENDONUCLEASE
Paelopatides30832TUBBY-RELATED
Paelopatides30833UNCHARACTERIZED
Paelopatides30834COILED-COIL DOMAIN-CONTAINING 74A
Paelopatides30835-
Paelopatides30836DYNACTIN 1-RELATED MICROTUBULE-BINDING
Paelopatides30837ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30838-
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