About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31044CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides31046FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides31047RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides31048-
Paelopatides31049(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
Paelopatides31050PROTEIN CBG26694
Paelopatides31051CENTROMERE PROTEIN L
Paelopatides31052REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31053-
Paelopatides310546-PHOSPHOGLUCONOLACTONASE
Paelopatides31055REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31056DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL
Paelopatides31057-
Paelopatides31058UNCHARACTERIZED
Paelopatides31059-
Paelopatides31060PROTEASOME REGULATOR PA28
Paelopatides31061-
Paelopatides31062KINETOCHORE PROTEIN SPC25-RELATED
Paelopatides31063GROWTH FACTOR RECEPTOR-BOUND PROTEIN
Paelopatides31064BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1
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