About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31065-
Paelopatides31066PROTEIN CBG26694
Paelopatides31067-
Paelopatides31068HOMEOBOX PROTEIN ARISTALESS
Paelopatides31069MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides31070CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31071CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides31072-
Paelopatides31073UBIQUITIN
Paelopatides31074EPM2A-INTERACTING PROTEIN 1
Paelopatides31075EPM2A-INTERACTING PROTEIN 1
Paelopatides31076-
Paelopatides31077EPM2A-INTERACTING PROTEIN 1
Paelopatides31078ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides31079RETROTRANSPOSON
Paelopatides31080RETROTRANSPOSON
Paelopatides31081PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides31082-
Paelopatides31083REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31084-
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