About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides30935-
Paelopatides30936ATP-DEPENDENT RNA HELICASE
Paelopatides30937BRCA2 AND CDKN1A INTERACTING PROTEIN
Paelopatides30938NHL REPEAT-CONTAINING PROTEIN 2
Paelopatides30939TRYPTOPHAN 2,3-DIOXYGENASE
Paelopatides30940ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides30941ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides30942REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30943-
Paelopatides30944CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides30945-
Paelopatides30946PROTEIN CBG26694
Paelopatides30947-
Paelopatides30948REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30949REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides30950PROTEIN CBG26694
Paelopatides30951-
Paelopatides30952RIKEN CDNA 2310061I04 GENE
Paelopatides30953RETROTRANSPOSON GAG-LIKE PROTEIN 9
Paelopatides30954FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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