About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides31974ARRESTIN DOMAIN CONTAINING PROTEIN
Paelopatides31975DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
Paelopatides31976HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides31977RHO FAMILY GTPASE
Paelopatides31978TRANSCRIPTIONAL ADAPTER 3-RELATED
Paelopatides31979SOX100B
Paelopatides31980-
Paelopatides31981COLLAGEN ALPHA
Paelopatides31982TRANSPOSON
Paelopatides31983-
Paelopatides31984-
Paelopatides31985-
Paelopatides31986SULFOQUINOVOSIDASE
Paelopatides31987SULFOQUINOVOSIDASE
Paelopatides31988REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides31989-
Paelopatides31990RAB FAMILY
Paelopatides31991TRANSMEMBRANE PROTEIN 251
Paelopatides31992-
Paelopatides31993BONUS, ISOFORM C-RELATED
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