About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32014GUANYLYL CYCLASE
Paelopatides32015EPM2A-INTERACTING PROTEIN 1
Paelopatides32016GUANYLYL CYCLASE
Paelopatides32017PROTEIN CBG26694
Paelopatides32018DNA2/NAM7 HELICASE FAMILY MEMBER
Paelopatides32046BONUS, ISOFORM C-RELATED
Paelopatides32047POLY ADP-RIBOSE GLYCOHYDROLASE
Paelopatides32048-
Paelopatides32049REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides32050IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides32051-
Paelopatides32052-
Paelopatides32053ADIPOR/PROGESTIN RECEPTOR-RELATED
Paelopatides32054ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32055-
Paelopatides32056ATP-DEPENDENT RNA HELICASE
Paelopatides32057PROTEIN CBG26694
Paelopatides32058PROTEIN CBG26694
Paelopatides32059-
Paelopatides32060CXC DOMAIN-CONTAINING PROTEIN-RELATED
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