About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32101-
Paelopatides32102-
Paelopatides32103POL PROTEIN
Paelopatides32104ASPARTYL PROTEASE-RELATED
Paelopatides32105REVERSE TRANSCRIPTASES
Paelopatides32106ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32107PROTEIN ECT2
Paelopatides32108NUDIX HYDROLASE
Paelopatides32109PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides32110TGF-BETA FAMILY
Paelopatides32111-
Paelopatides32112F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32113-
Paelopatides32114-
Paelopatides32115SI:CH211-196P9.1-RELATED
Paelopatides32116-
Paelopatides32117-
Paelopatides32118RIBOSOMAL PROTEIN L5-RELATED
Paelopatides32119SCY1-RELATED S/T PROTEIN KINASE-LIKE
Paelopatides32120SCY1-RELATED S/T PROTEIN KINASE-LIKE
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