About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32346PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides32347-
Paelopatides32348-
Paelopatides32349CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides32350NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides32351PROTEIN AF-9 HOMOLOG
Paelopatides32352-
Paelopatides32353DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4
Paelopatides32354PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Paelopatides32355FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Paelopatides32356PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides32357-
Paelopatides32358-
Paelopatides32359-
Paelopatides32360NUCLEOPORIN P54
Paelopatides32361PROTEIN INTURNED
Paelopatides32362PROTEIN CBG26694
Paelopatides32363-
Paelopatides32364GLYCOSYL HYDROLASE-RELATED
Paelopatides32365CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1
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