About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32548UNCHARACTERIZED
Paelopatides32549ENDONUCLEASE-RELATED
Paelopatides32550-
Paelopatides32551INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS
Paelopatides32552PROTEIN CBG26694
Paelopatides32553PROTEIN CBG26694
Paelopatides32554PROTEIN CBG26694
Paelopatides32555TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides32556REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides32557FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides32558CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT BETA
Paelopatides32559ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32560-
Paelopatides32561SH3 DOMAIN-CONTAINING
Paelopatides32562SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides32563H2.0-LIKE HOMEOBOX PROTEIN
Paelopatides32564YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
Paelopatides32565PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides32566YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
Paelopatides32567YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP
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