About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides32426NUCLEAR HORMONE RECEPTOR
Paelopatides32428ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides32429-
Paelopatides32430ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
Paelopatides32431ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2
Paelopatides32432DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
Paelopatides32433E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED
Paelopatides32434UNCHARACTERIZED
Paelopatides32435-
Paelopatides32436ARGINASE/AGMATINASE
Paelopatides32437-
Paelopatides32438ENDONUCLEASE-RELATED
Paelopatides32439ATR-INTERACTING PROTEIN
Paelopatides32440ATR-INTERACTING PROTEIN
Paelopatides32441NADH-UBIQUINONE OXIDOREDUCTASE ESSS SUBUNIT, MITOCHONDRIAL PRECURSOR
Paelopatides32442SERINE/THREONINE-PROTEIN KINASE
Paelopatides32443PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides32444-
Paelopatides32445MAINTENANCE OF KILLER 16 MAK16 PROTEIN-RELATED
Paelopatides32446CCAAT/ENHANCER BINDING PROTEIN
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