About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33632FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides33633ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides33634REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33635NETRIN RECEPTOR UNC5
Paelopatides33636ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides33637BONUS, ISOFORM C-RELATED
Paelopatides33638HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides3363926S PROTEASOME REGULATORY SUBUNIT
Paelopatides3364026S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8
Paelopatides33641-
Paelopatides33642GLYCOSYL HYDROLASE
Paelopatides33643-
Paelopatides33644APPLE DOMAIN-CONTAINING PROTEIN
Paelopatides33645TETRASPANIN
Paelopatides33646-
Paelopatides33647-
Paelopatides33648-
Paelopatides33649REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides33650-
Paelopatides33651SI:CH211-196P9.1-RELATED
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