About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33572-
Paelopatides33573ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides33574TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides33575ENZYMATIC POLYPROTEIN-RELATED
Paelopatides33576-
Paelopatides33577PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides33578-
Paelopatides33579SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides33580SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides33581SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides33582DNA HELICASE RECQ FAMILY MEMBER
Paelopatides33583-
Paelopatides33584GH11358P
Paelopatides33585ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides33586-
Paelopatides33587PX DOMAIN-CONTAINING PROTEIN
Paelopatides33588THIAMIN PYROPHOSPHOKINASE
Paelopatides33589SEC61 GAMMA SUBUNIT
Paelopatides33590UNCHARACTERIZED
Paelopatides33591UNCHARACTERIZED
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