About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33674LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
Paelopatides33675SI:CH211-196P9.1-RELATED
Paelopatides33676-
Paelopatides33677SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides33678PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Paelopatides33679NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
Paelopatides33680RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
Paelopatides33681RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1
Paelopatides33682-
Paelopatides33683ZGC:195170
Paelopatides33684ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides33685TETRASPANIN
Paelopatides33686-
Paelopatides33687PHOSPHATASE WITH HOMOLOGY TO TENSIN
Paelopatides33688-
Paelopatides33689KELCH PROTEIN
Paelopatides33690KELCH PROTEIN
Paelopatides33691UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides33692OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides33693OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
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