About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33715BONUS, ISOFORM C-RELATED
Paelopatides33716BONUS, ISOFORM C-RELATED
Paelopatides33717ARGININE/SERINE RICH SPLICING FACTOR SF4/14
Paelopatides33718-
Paelopatides33719-
Paelopatides33720POLYCOMB GROUP RING FINGER PROTEIN
Paelopatides33721NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
Paelopatides33722SOLUTE CARRIER FAMILY 39
Paelopatides33723-
Paelopatides33724-
Paelopatides33725PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN
Paelopatides33726-
Paelopatides33727CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides33728-
Paelopatides33729-
Paelopatides33730CCAAT-BINDING FACTOR-RELATED
Paelopatides33731PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides33732PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides33733-
Paelopatides33734TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE
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