About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides33967TUBULIN
Paelopatides33968TUBULIN
Paelopatides34079-
Paelopatides34080RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides34081INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides34082INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides34083-
Paelopatides34084-
Paelopatides34085PHOSPHOGLYCOLATE PHOSPHATASE
Paelopatides34086RETINOL DEHYDROGENASE
Paelopatides34087PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
Paelopatides34088PROTEIN CBG26694
Paelopatides34089ZINC FINGER PROTEIN
Paelopatides34090-
Paelopatides34091HISTIDINE TRIAD HIT PROTEIN
Paelopatides34092ENDONUCLEASE-RELATED
Paelopatides34093PROTEIN CBG26694
Paelopatides34094-
Paelopatides34095HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides34096GALACTOSE-3-O-SULFOTRANSFERASE
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