About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34199-
Paelopatides34200MATRIX METALLOPROTEINASE
Paelopatides34201-
Paelopatides34202-
Paelopatides34203ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides34204REVERSE TRANSCRIPTASES
Paelopatides34205REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34206METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED
Paelopatides34207SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides34208UNCHARACTERIZED
Paelopatides34209-
Paelopatides34210ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides34211UNCHARACTERIZED
Paelopatides34213SYNAPTIC VESICLE GLYCOPROTEIN 2
Paelopatides34214-
Paelopatides34217OPSIN
Paelopatides34218CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
Paelopatides34219CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
Paelopatides34220ELL-ASSOCIATED FACTOR EAF
Paelopatides34221PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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