About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34178METALLOPROTEASE TLDD
Paelopatides34179-
Paelopatides34180LONG-CHAIN-FATTY-ACID--COA LIGASE
Paelopatides34181-
Paelopatides34182PROTEIN EMI5 HOMOLOG, MITOCHONDRIAL
Paelopatides34183ARMADILLO REPEAT-CONTAINING PROTEIN 3
Paelopatides34184PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides34185-
Paelopatides34186L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides34187REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34188PROTEIN CBG23806
Paelopatides34189PROTEIN CBG23806
Paelopatides34190-
Paelopatides34191-
Paelopatides34193-
Paelopatides34194-
Paelopatides34195-
Paelopatides34196-
Paelopatides34197-
Paelopatides34198SEQUESTOSOME 1-RELATED
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