About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34804ENDONUCLEASE-RELATED
Paelopatides34805CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides34806ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides34807NIPSNAP-RELATED
Paelopatides34808STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1
Paelopatides34809PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides34810-
Paelopatides34811-
Paelopatides34812UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X
Paelopatides34813ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
Paelopatides34815REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34816WD40 REPEAT PROTEIN
Paelopatides34817REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides34818MULTICOPPER OXIDASE-RELATED
Paelopatides34819-
Paelopatides34820LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
Paelopatides34821-
Paelopatides34822ENDONUCLEASE-RELATED
Paelopatides34823TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides34824-
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