About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides34756EXODEOXYRIBONUCLEASE III
Paelopatides34757ENZYMATIC POLYPROTEIN-RELATED
Paelopatides34758ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides34759ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides34760ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides34761TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Paelopatides34762TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Paelopatides34763CYTOCHROME P450 508A4-RELATED
Paelopatides34764STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
Paelopatides34765FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides34766-
Paelopatides34767NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5
Paelopatides34768FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides34769FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides34770FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides34771-
Paelopatides34772FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides34773MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Paelopatides34774LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN
Paelopatides34775FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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