About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35534HSD9
Paelopatides35535MINA53 MYC INDUCED NUCLEAR ANTIGEN
Paelopatides35536ATPASES OF THE PP SUPERFAMILY-RELATED
Paelopatides35537I[[H]] CHANNEL, ISOFORM E
Paelopatides35538TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12
Paelopatides35539PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN
Paelopatides35540T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
Paelopatides35541RNA RECOGNITION MOTIF-CONTAINING
Paelopatides35542ZINC FINGER MYM-TYPE PROTEIN
Paelopatides35543ZINC FINGER MYM-TYPE PROTEIN
Paelopatides3554428S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL
Paelopatides35545AQUAPORIN TRANSPORTER
Paelopatides35546NETRIN RECEPTOR UNC5
Paelopatides35547D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Paelopatides35548MACROGLOBULIN / COMPLEMENT
Paelopatides35549CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides35550-
Paelopatides35551FI04643P-RELATED
Paelopatides35552BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides35553-
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