About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35594BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides35595DED DOMAIN-CONTAINING PROTEIN
Paelopatides35596MULTICOPPER OXIDASE-RELATED
Paelopatides35597REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides35598-
Paelopatides35599INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides35600TRANSPOSON
Paelopatides35601-
Paelopatides35602PROTEIN CBG26694
Paelopatides35603PROTEIN CBG26694
Paelopatides35604-
Paelopatides35605NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1
Paelopatides35606-
Paelopatides35607NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1
Paelopatides35608SERINE-THREONINE PROTEIN KINASE
Paelopatides35609-
Paelopatides35610ALPHA-AMYLASE
Paelopatides35611ALPHA-AMYLASE
Paelopatides35612LYSINE-SPECIFIC DEMETHYLASE
Paelopatides35613PHD FINGER PROTEINS
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