About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35654-
Paelopatides35655NITRIC OXIDE SYNTHASE-RELATED
Paelopatides35656CXXC-TYPE ZINC FINGER PROTEIN 1
Paelopatides35657REVERSE TRANSCRIPTASES
Paelopatides35658ODD-SKIPPED - RELATED
Paelopatides35659ENDONUCLEASE
Paelopatides35660PROTEIN CBG26694
Paelopatides35661ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides35662MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
Paelopatides35663METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB
Paelopatides35664REPRESSOR OF YIELD OF DENV PROTEIN
Paelopatides35665NUCLEAR HORMONE RECEPTOR
Paelopatides35666-
Paelopatides35667NUCLEAR HORMONE RECEPTOR
Paelopatides35668SI:CH73-193C12.2-RELATED
Paelopatides35669SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides35670GOLGI-LOCALIZED, GAMMA-ADAPTIN EAR CONTAINING, ARF BINDING PROTEIN
Paelopatides35671SERINE HYDROXYMETHYLTRANSFERASE
Paelopatides35672ABC TRANSPORTER G FAMILY MEMBER 28
Paelopatides35673DYNEIN HEAVY CHAIN
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