About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35614MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
Paelopatides35615-
Paelopatides35616-
Paelopatides35617DIPHTHINE SYNTHASE
Paelopatides35618AP COMPLEX SUBUNIT MU
Paelopatides35619MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER
Paelopatides35620TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA
Paelopatides35621HYALURONIC ACID-BINDING PROTEIN 4
Paelopatides35622TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides35623TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides35624ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides35625TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Paelopatides35626SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides35627-
Paelopatides35628MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Paelopatides35629CHARGED MULTIVESICULAR BODY PROTEIN
Paelopatides35630-
Paelopatides35631DEOXYNUCLEOSIDE KINASE
Paelopatides35632-
Paelopatides35633UNCHARACTERIZED
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