About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides35634PROTEIN CBG26694
Paelopatides35635-
Paelopatides35636-
Paelopatides35637CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 221
Paelopatides35638PROTEIN CBG26694
Paelopatides35639PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides35640RETROTRANSPOSON
Paelopatides35641RETROTRANSPOSON
Paelopatides35642RETROTRANSPOSON
Paelopatides35643RETROTRANSPOSON
Paelopatides35644ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides35645OPSIN
Paelopatides35646B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides35647RAS-RELATED PROTEIN RAB
Paelopatides35648-
Paelopatides35649TWO PORE CALCIUM CHANNEL PROTEIN 1
Paelopatides35650EPM2A-INTERACTING PROTEIN 1
Paelopatides35651TWO PORE CALCIUM CHANNEL PROTEIN 1
Paelopatides35652IQ DOMAIN-CONTAINING PROTEIN D
Paelopatides35653-
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