About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36567-
Paelopatides36568FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides36569OS05G0424000 PROTEIN-RELATED
Paelopatides36570CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36571-
Paelopatides36572PROTEIN CBG26694
Paelopatides36573-
Paelopatides36574POL PROTEIN
Paelopatides36575ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides36576PROTEIN CBG26694
Paelopatides36577C2 DOMAIN-CONTAINING PROTEIN 5
Paelopatides36578PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides36579PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides36580-
Paelopatides36581PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
Paelopatides36582INTEGRATOR COMPLEX SUBUNIT 2
Paelopatides36583-
Paelopatides36584PROTEIN CBG26694
Paelopatides36585UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides36586-
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