About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36506DEATH-ASSOCIATED PROTEIN 1
Paelopatides36507EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides36508-
Paelopatides36509-
Paelopatides36510-
Paelopatides36511LRP2-BINDING PROTEIN
Paelopatides36512PROTEASOME MATURATION PROTEIN UMP1
Paelopatides36513BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
Paelopatides36514CUBILIN-LIKE PROTEIN
Paelopatides36515F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
Paelopatides36516-
Paelopatides36517LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides36518LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides36519-
Paelopatides36520ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36521ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36522L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides36523-
Paelopatides36524RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D
Paelopatides36525REVERSE TRANSCRIPTASE
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