About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36486TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
Paelopatides36487CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
Paelopatides36488-
Paelopatides36489SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
Paelopatides36490-
Paelopatides36491TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides36492-
Paelopatides36493G PROTEIN-COUPLED RECEPTOR-RELATED
Paelopatides36494-
Paelopatides36495-
Paelopatides36496GLYCOSYLATED LYSOSOMAL MEMBRANE PROTEIN
Paelopatides36497GLUTAREDOXIN 2
Paelopatides36498MEVALONATE KINASE/GALACTOKINASE
Paelopatides36499ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36500MEVALONATE KINASE/GALACTOKINASE
Paelopatides36501MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S30/P52 PRO-APOTOTIC PROTEIN
Paelopatides36502AGAP008221-PA
Paelopatides36503-
Paelopatides36504RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides36505G-PROTEIN COUPLED RECEPTOR
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