About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36526SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides36527COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides36528CYTOCHROME P450 FAMILY 3
Paelopatides36529F-BOX ONLY PROTEIN 4
Paelopatides36530PROTEIN CBG26694
Paelopatides36531EXPRESSED PROTEIN
Paelopatides36533-
Paelopatides36534CENTROMERE PROTEIN X
Paelopatides36535-
Paelopatides36536FI04643P-RELATED
Paelopatides36537GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides36538PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides36539EXPRESSED PROTEIN
Paelopatides36540UBIQUITIN-PROTEIN LIGASE E3C
Paelopatides36541-
Paelopatides36542REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36543ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides36544POL PROTEIN
Paelopatides36545ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides36546-
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