About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides36587COMPLEMENT COMPONENT 1
Paelopatides36588-
Paelopatides36589PROTEIN ARGININE N-METHYLTRANSFERASE
Paelopatides36591-
Paelopatides36592REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36593TRANSMEMBRANE PROTEIN 141
Paelopatides36594-
Paelopatides36595PEROXISOMAL SARCOSINE OXIDASE
Paelopatides36596STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
Paelopatides36597INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Paelopatides36598-
Paelopatides36599POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides36600RADIAL SPOKE HEAD 1 HOMOLOG
Paelopatides36601-
Paelopatides36602EXPRESSED PROTEIN
Paelopatides36603BONUS, ISOFORM C-RELATED
Paelopatides36604ACYL-COA DEHYDROGENASE
Paelopatides36605PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides36606REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides36607-
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