About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37893NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides37894-
Paelopatides37895PROTEIN CBG26694
Paelopatides37896HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37897EPM2A-INTERACTING PROTEIN 1
Paelopatides37898-
Paelopatides37899BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides37900-
Paelopatides37901BEN DOMAIN-CONTAINING PROTEIN 6
Paelopatides37902E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides37903-
Paelopatides37904-
Paelopatides37905RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER
Paelopatides379062-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL
Paelopatides37907-
Paelopatides37908SELENOPROTEIN W
Paelopatides37909CYSTATIN
Paelopatides37910-
Paelopatides37911UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1
Paelopatides37912DEAD-BOX ATP-DEPENDENT RNA HELICASE 50
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