About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides37958ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37959IP13529P
Paelopatides37960-
Paelopatides37964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides37965KELCH PROTEIN
Paelopatides37966HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides37967METHYLTRANSFERASE-RELATED
Paelopatides37968TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE
Paelopatides37969ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides37970ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides37971-
Paelopatides37974ADP RIBOSYLATION FACTOR-RELATED
Paelopatides37975-
Paelopatides37976ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37977ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides37978SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides37979PROTEIN CBG26694
Paelopatides37980NUCLEOLAR COMPLEX PROTEIN 3
Paelopatides37981EPM2A-INTERACTING PROTEIN 1
Paelopatides37982-
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