About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38031PROTEIN CBG26694
Paelopatides38032CATION-TRANSPORTING ATPASE-RELATED
Paelopatides38033NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides38034-
Paelopatides38035OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides38036TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides38037-
Paelopatides38038COILED-COIL DOMAIN-CONTAINING PROTEIN 57
Paelopatides38039LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN
Paelopatides38040SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2
Paelopatides38041-
Paelopatides38042SEPTIN
Paelopatides38043-
Paelopatides38044PEPTIDE CHAIN RELEASE FACTOR
Paelopatides38045XYLOSYLTRANSFERASE OXT
Paelopatides38046CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70
Paelopatides38047CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70
Paelopatides38048REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides38049L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Paelopatides38050BONUS, ISOFORM C-RELATED
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