About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38480UNCHARACTERIZED
Paelopatides38481UNCHARACTERIZED
Paelopatides38482PROTEIN CBG26694
Paelopatides38483-
Paelopatides38484ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides38485GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
Paelopatides38486TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED
Paelopatides38487TRANSMEMBRANE PROTEIN 254
Paelopatides38488PROTEIN ECT2
Paelopatides38489-
Paelopatides38491PROTEIN ECT2
Paelopatides38492-
Paelopatides38493PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE
Paelopatides38494-
Paelopatides38495-
Paelopatides38496WD REPEAT DOMAIN-CONTAINING FAMILY
Paelopatides38497E3 UBIQUITIN-PROTEIN LIGASE TRIM
Paelopatides38498UNCHARACTERIZED
Paelopatides38499NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides38500GLUTAREDOXIN 2
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