About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39117XANTHINE DEHYDROGENASE
Paelopatides39118OPSIN
Paelopatides39119ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39120INTEGRIN ALPHA
Paelopatides39121INTEGRIN ALPHA
Paelopatides39122ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39123NEPHRIN
Paelopatides39124NECTIN-RELATED
Paelopatides39125TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6
Paelopatides39126GLYOXALASE FAMILY PROTEIN
Paelopatides39127MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG
Paelopatides39128REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39129GEMIN2
Paelopatides39130TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides39131-
Paelopatides39132ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides39133PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4
Paelopatides39134GLYCOSYLTRANSFERASE
Paelopatides39135PROTEIN CBG26694
Paelopatides39136ALPHA- 1,3 -FUCOSYLTRANSFERASE
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