About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39177-
Paelopatides39178TRNA (GUANINE-9-) METHYLTRANSFERASE
Paelopatides39179BICAUDAL D FAMILY MEMBER
Paelopatides39180N-TERMINAL ACETYLTRANSFERASE
Paelopatides39181-
Paelopatides39182HOMEOBOX PROTEIN NKX
Paelopatides39183SKELETOR-RELATED
Paelopatides39184SKELETOR-RELATED
Paelopatides39185SKELETOR-RELATED
Paelopatides39186-
Paelopatides39187N-ACETYLNEURAMINATE SYNTHASE
Paelopatides39188-
Paelopatides39189LORICRIN
Paelopatides39190-
Paelopatides39191DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides39192UNCHARACTERIZED
Paelopatides39193RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides39194-
Paelopatides39195ENZYMATIC POLYPROTEIN-RELATED
Paelopatides39196PROTEIN CBG26694
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