About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides38990-
Paelopatides38992CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides38993RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides38994-
Paelopatides38995CALCIUM-BINDING PROTEIN 39-RELATED
Paelopatides38996ADP-RIBOSYL CYCLASE
Paelopatides38997-
Paelopatides38998SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides38999SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides39000-
Paelopatides39001SH2-SH3 ADAPTOR PROTEIN-RELATED
Paelopatides39002UNCHARACTERIZED
Paelopatides39003-
Paelopatides39004-
Paelopatides39005POL PROTEIN
Paelopatides39006-
Paelopatides39007PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides39008-
Paelopatides39009FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides39010TRANSMEMBRANE PROTEIN
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