About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides39034CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Paelopatides39035PROTEIN CBG26694
Paelopatides39036PROTEIN CBG26694
Paelopatides39037FI04643P-RELATED
Paelopatides39038-
Paelopatides39039RETROTRANSPOSON
Paelopatides39040RETROTRANSPOSON
Paelopatides39041REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides39042EPM2A-INTERACTING PROTEIN 1
Paelopatides39043ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides39044ENZYMATIC POLYPROTEIN-RELATED
Paelopatides39045PROTEIN CBG26694
Paelopatides39046PROTEIN CBG26694
Paelopatides39047PROTEIN CBG26694
Paelopatides39048POL PROTEIN
Paelopatides39050-
Paelopatides39051MUCIN 4-RELATED
Paelopatides39052-
Paelopatides39053ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides39054-
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